Publication

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Authors: Klughammer J, Abravanel DL, Segerstolpe Å, Blosser TR, Goltsev Y, Cui Y, Goodwin DR, Sinha A, Ashenberg O, Slyper M, Vigneau S, Jané-Valbuena J, Alon S, Caraccio C, Chen J, Cohen O, Cullen N, DelloStritto LK, Dionne D, Files J, Frangieh A, Helvie K, Hughes ME, Inga S, Kanodia A, Lako A, MacKichan C, Mages S, Moriel N, Murray E, Napolitano S, Nguyen K, Nitzan M, Ortiz R, Patel M, Pfaff KL, Porter CBM, Rotem A, Strauss S, Strasser R, Thorner AR, Turner M, Wakiro I, Waldman J, Wu J, Gómez Tejeda Zañudo J, Zhang D, Lin NU, Tolaney SM, Winer EP, Boyden ES, Chen F, Nolan GP, Rodig SJ, Zhuang X, Rozenblatt-Rosen O, Johnson BE, Regev A, Wagle N
Journal: Nature Medicine  Pubmed: 39478111   DOI: 10.1038/s41591-024-03215-z
Atlas: Broad Institute, Dana-Farber Cancer Institute, Harvard Medical School

Abstract

Although metastatic disease is the leading cause of cancer-related deaths, its tumor microenvironment remains poorly characterized due to technical and biospecimen limitations. In this study, we assembled a multi-modal spatial and cellular map of 67 tumor biopsies from 60 patients with metastatic breast cancer across diverse clinicopathological features and nine anatomic sites with detailed clinical annotations. We combined single-cell or single-nucleus RNA sequencing for all biopsies with a panel of four spatial expression assays (Slide-seq, MERFISH, ExSeq and CODEX) and H&E staining of consecutive serial sections from up to 15 of these biopsies. We leveraged the coupled measurements to provide reference points for the utility and integration of different experimental techniques and used them to assess variability in cell type composition and expression as well as emerging spatial expression characteristics across clinicopathological and methodological diversity. Finally, we assessed spatial expression and co-localization features of macrophage populations, characterized three distinct spatial phenotypes of epithelial-to-mesenchymal transition and identified expression programs associated with local T cell infiltration versus exclusion, showcasing the potential of clinically relevant discovery in such maps.


Data Availability
FilesCRDC-GC/SB-CGC (dbGaP )CRDC-GC/SB-CGC (Open Access )Synapse (Open Access )
Bulk DNA Level 29800
Bulk RNA-seq Level 25600
CODEX0013
CODEX Level 2012030
ExSEQ0021156
H&E0028
H&E Level 20100
MERFISH0018
MERFISH Level 2020440
MERFISH Level 30024
MERFISH Level 40012
MIBI Level 20460
MIBI Level 30046
MIBI Level 4001
Slide-seq Level 1600
Slide-seq Level 22700
Slide-seq Level 300189
Slide-seq V20015
scRNA-seq0015
scRNA-seq Level 124800
scRNA-seq Level 211600
scRNA-seq Level 300348
scRNA-seq Level 4002
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
reg001_X01_Y08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y07.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01_Y02.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01_Y04.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03_Y03.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y06.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03_Y05.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y02.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01_Y06.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y03.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y05.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y04.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...2_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...4_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...8_Z08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...6_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...2_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...3_Z10.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...5_Z08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...7_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...9_Z01.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...1_Z10.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01...1_Z11.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...3_Z10.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...4_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...5_Z08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...6_Z08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...7_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...9_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02...8_Z08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...3_Z10.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...1_Z11.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...5_Z08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...2_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...7_Z05.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...4_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...9_Z09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...6_Z06.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03...8_Z08.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01_Y09.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03_Y06.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03_Y01.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01_Y03.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03_Y02.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01_Y05.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X03_Y04.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X02_Y01.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
reg001_X01_Y07.tif
HTAN HTAPP
HTA1_783_4081303
CODEX
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
HTAPP-211-...fastq.gz
HTAN HTAPP
HTA1_211_6751320
scRNA-seq
Level 1
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-211-...fastq.gz
HTAN HTAPP
HTA1_211_6751320
scRNA-seq
Level 1
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-211-...fastq.gz
HTAN HTAPP
HTA1_211_6751320
scRNA-seq
Level 1
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-211-...fastq.gz
HTAN HTAPP
HTA1_211_6751320
scRNA-seq
Level 1
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-213-...fastq.gz
HTAN HTAPP
HTA1_213_6752601
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-213-...fastq.gz
HTAN HTAPP
HTA1_213_6752601
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_6755320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-213-...fastq.gz
HTAN HTAPP
HTA1_213_6752601
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-213-...fastq.gz
HTAN HTAPP
HTA1_213_6752601
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_6755320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_6755320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_7537320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_7537320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_6755320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_7537320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-223-...fastq.gz
HTAN HTAPP
HTA1_223_7537320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-225-...fastq.gz
HTAN HTAPP
HTA1_225_6756320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-226-...fastq.gz
HTAN HTAPP
HTA1_226_6757320
scRNA-seq
Level 1
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-225-...fastq.gz
HTAN HTAPP
HTA1_225_6756320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-226-...fastq.gz
HTAN HTAPP
HTA1_226_6757320
scRNA-seq
Level 1
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-226-...fastq.gz
HTAN HTAPP
HTA1_226_6757320
scRNA-seq
Level 1
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-226-...fastq.gz
HTAN HTAPP
HTA1_226_6757320
scRNA-seq
Level 1
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-231-...fastq.gz
HTAN HTAPP
HTA1_231_6758320
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-231-...fastq.gz
HTAN HTAPP
HTA1_231_6758320
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-231-...fastq.gz
HTAN HTAPP
HTA1_231_6758320
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-231-...fastq.gz
HTAN HTAPP
HTA1_231_6758320
scRNA-seq
Level 1
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-232-...fastq.gz
HTAN HTAPP
HTA1_232_6759320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-232-...fastq.gz
HTAN HTAPP
HTA1_232_6759320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-232-...fastq.gz
HTAN HTAPP
HTA1_232_6759320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-232-...fastq.gz
HTAN HTAPP
HTA1_232_6759320
scRNA-seq
Level 1
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-262-...fastq.gz
HTAN HTAPP
HTA1_262_602101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-262-...fastq.gz
HTAN HTAPP
HTA1_262_602101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-262-...fastq.gz
HTAN HTAPP
HTA1_262_602101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-262-...fastq.gz
HTAN HTAPP
HTA1_262_602101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-262-...fastq.gz
HTAN HTAPP
HTA1_262_602201
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-262-...fastq.gz
HTAN HTAPP
HTA1_262_602201
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...fastq.gz
HTAN HTAPP
HTA1_285_751101
scRNA-seq
Level 1
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-309-...fastq.gz
HTAN HTAPP
HTA1_309_871101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-309-...fastq.gz
HTAN HTAPP
HTA1_309_871101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-309-...fastq.gz
HTAN HTAPP
HTA1_309_871101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-309-...fastq.gz
HTAN HTAPP
HTA1_309_871101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-313-...fastq.gz
HTAN HTAPP
HTA1_313_932101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Adenocarcinoma NOS
dbGaP
HTAPP-313-...fastq.gz
HTAN HTAPP
HTA1_313_932101
scRNA-seq
Level 1
Upper-outer quadrant of breast
Adenocarcinoma NOS
dbGaP
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
HTAPP-226-...ormal.bam
HTAN HTAPP
HTA1_226_0001501
Bulk DNA
Level 2
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-226-...tumor.bam
HTAN HTAPP
HTA1_226_6757501
Bulk DNA
Level 2
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-231-...ormal.bam
HTAN HTAPP
HTA1_231_0001501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-231-...tumor.bam
HTAN HTAPP
HTA1_231_6758501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-232-...ormal.bam
HTAN HTAPP
HTA1_232_0001501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-232-...tumor.bam
HTAN HTAPP
HTA1_232_6759501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-262-...ormal.bam
HTAN HTAPP
HTA1_262_0001501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-262-...tumor.bam
HTAN HTAPP
HTA1_262_602501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-285-...ormal.bam
HTAN HTAPP
HTA1_285_0001501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-285-...tumor.bam
HTAN HTAPP
HTA1_285_751501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-309-...ormal.bam
HTAN HTAPP
HTA1_309_0001501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-309-...tumor.bam
HTAN HTAPP
HTA1_309_871501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-313-...ormal.bam
HTAN HTAPP
HTA1_313_0001501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
dbGaP
HTAPP-313-...tumor.bam
HTAN HTAPP
HTA1_313_932501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
dbGaP
HTAPP-321-...ormal.bam
HTAN HTAPP
HTA1_321_0001501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-321-...tumor.bam
HTAN HTAPP
HTA1_321_1021501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-364-...ormal.bam
HTAN HTAPP
HTA1_364_0001501
Bulk DNA
Level 2
Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-364-...tumor.bam
HTAN HTAPP
HTA1_364_1321501
Bulk DNA
Level 2
Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-382-...ormal.bam
HTAN HTAPP
HTA1_382_0001501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-382-...tumor.bam
HTAN HTAPP
HTA1_382_1441501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-414-...ormal.bam
HTAN HTAPP
HTA1_414_0001501
Bulk DNA
Level 2
Upper-inner quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-414-...tumor.bam
HTAN HTAPP
HTA1_414_1681501
Bulk DNA
Level 2
Upper-inner quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-425-...ormal.bam
HTAN HTAPP
HTA1_425_0001501
Bulk DNA
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-425-...tumor.bam
HTAN HTAPP
HTA1_425_1771501
Bulk DNA
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-514-...ormal.bam
HTAN HTAPP
HTA1_514_0001501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-514-...tumor.bam
HTAN HTAPP
HTA1_514_6760501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-516-...ormal.bam
HTAN HTAPP
HTA1_516_0001501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-516-...tumor.bam
HTAN HTAPP
HTA1_516_6761501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-519-...ormal.bam
HTAN HTAPP
HTA1_519_0001501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-519-...tumor.bam
HTAN HTAPP
HTA1_519_6762501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-521-...ormal.bam
HTAN HTAPP
HTA1_521_0001501
Bulk DNA
Level 2
Breast NOS
Lobular and ductal carcinoma
dbGaP
HTAPP-521-...tumor.bam
HTAN HTAPP
HTA1_521_6763501
Bulk DNA
Level 2
Breast NOS
Lobular and ductal carcinoma
dbGaP
HTAPP-525-...ormal.bam
HTAN HTAPP
HTA1_525_0001501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-525-...tumor.bam
HTAN HTAPP
HTA1_525_6765501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-562-...ormal.bam
HTAN HTAPP
HTA1_562_0001501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-562-...tumor.bam
HTAN HTAPP
HTA1_562_25811501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-586-...ormal.bam
HTAN HTAPP
HTA1_586_0001501
Bulk DNA
Level 2
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-586-...tumor.bam
HTAN HTAPP
HTA1_586_8599501
Bulk DNA
Level 2
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-589-...ormal.bam
HTAN HTAPP
HTA1_589_0001501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-589-...tumor.bam
HTAN HTAPP
HTA1_589_2851501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-589-...tumor.bam
HTAN HTAPP
HTA1_589_2860501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-611-...ormal.bam
HTAN HTAPP
HTA1_611_0001501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-611-...tumor.bam
HTAN HTAPP
HTA1_611_3062501
Bulk DNA
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-627-...ormal.bam
HTAN HTAPP
HTA1_627_0001501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-627-...tumor.bam
HTAN HTAPP
HTA1_627_3242501
Bulk DNA
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-649-...ormal.bam
HTAN HTAPP
HTA1_649_0001501
Bulk DNA
Level 2
Breast NOS
Adenocarcinoma NOS
dbGaP
HTAPP-649-...tumor.bam
HTAN HTAPP
HTA1_649_3422501
Bulk DNA
Level 2
Breast NOS
Adenocarcinoma NOS
dbGaP
HTAPP-662-...ormal.bam
HTAN HTAPP
HTA1_662_0001501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-662-...tumor.bam
HTAN HTAPP
HTA1_662_3602501
Bulk DNA
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-745-...ormal.bam
HTAN HTAPP
HTA1_745_0001501
Bulk DNA
Level 2
Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
HTAPP-211-...tumor.bam
HTAN HTAPP
HTA1_211_6751502
Bulk RNA-seq
Level 2
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-213-...tumor.bam
HTAN HTAPP
HTA1_213_6752502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-223-...tumor.bam
HTAN HTAPP
HTA1_223_6755502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-223-...tumor.bam
HTAN HTAPP
HTA1_223_7537502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-225-...tumor.bam
HTAN HTAPP
HTA1_225_6756502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-226-...tumor.bam
HTAN HTAPP
HTA1_226_6757502
Bulk RNA-seq
Level 2
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-231-...tumor.bam
HTAN HTAPP
HTA1_231_6758502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-232-...tumor.bam
HTAN HTAPP
HTA1_232_6759502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-262-...tumor.bam
HTAN HTAPP
HTA1_262_602502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-285-...tumor.bam
HTAN HTAPP
HTA1_285_751502
Bulk RNA-seq
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-309-...tumor.bam
HTAN HTAPP
HTA1_309_871502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-313-...tumor.bam
HTAN HTAPP
HTA1_313_932502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
dbGaP
HTAPP-321-...tumor.bam
HTAN HTAPP
HTA1_321_1021502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-364-...tumor.bam
HTAN HTAPP
HTA1_364_1321502
Bulk RNA-seq
Level 2
Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-382-...tumor.bam
HTAN HTAPP
HTA1_382_1441502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-414-...tumor.bam
HTAN HTAPP
HTA1_414_1681502
Bulk RNA-seq
Level 2
Upper-inner quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-425-...tumor.bam
HTAN HTAPP
HTA1_425_1771502
Bulk RNA-seq
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-514-...tumor.bam
HTAN HTAPP
HTA1_514_6760502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-516-...tumor.bam
HTAN HTAPP
HTA1_516_6761502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-519-...tumor.bam
HTAN HTAPP
HTA1_519_6762502
Bulk RNA-seq
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-521-...tumor.bam
HTAN HTAPP
HTA1_521_6763502
Bulk RNA-seq
Level 2
Breast NOS
Lobular and ductal carcinoma
dbGaP
HTAPP-525-...tumor.bam
HTAN HTAPP
HTA1_525_6765502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-562-...tumor.bam
HTAN HTAPP
HTA1_562_25811502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-586-...tumor.bam
HTAN HTAPP
HTA1_586_8599502
Bulk RNA-seq
Level 2
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-589-...tumor.bam
HTAN HTAPP
HTA1_589_2851502
Bulk RNA-seq
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-589-...tumor.bam
HTAN HTAPP
HTA1_589_2860502
Bulk RNA-seq
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-611-...tumor.bam
HTAN HTAPP
HTA1_611_3062502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-627-...tumor.bam
HTAN HTAPP
HTA1_627_3242502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-649-...tumor.bam
HTAN HTAPP
HTA1_649_3422502
Bulk RNA-seq
Level 2
Breast NOS
Adenocarcinoma NOS
dbGaP
HTAPP-662-...tumor.bam
HTAN HTAPP
HTA1_662_3602502
Bulk RNA-seq
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-745-...tumor.bam
HTAN HTAPP
HTA1_745_3961502
Bulk RNA-seq
Level 2
Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-752-...tumor.bam
HTAN HTAPP
HTA1_752_4051502
Bulk RNA-seq
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-783-...tumor.bam
HTAN HTAPP
HTA1_783_4081502
Bulk RNA-seq
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-806-...tumor.bam
HTAN HTAPP
HTA1_806_6789502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Lobular carcinoma NOS
dbGaP
HTAPP-812-...tumor.bam
HTAN HTAPP
HTA1_812_8239502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-814-...tumor.bam
HTAN HTAPP
HTA1_814_6879502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-835-...tumor.bam
HTAN HTAPP
HTA1_835_6999502
Bulk RNA-seq
Level 2
Breast NOS
Carcinoma NOS
dbGaP
HTAPP-851-...tumor.bam
HTAN HTAPP
HTA1_851_4351502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Lobular and ductal carcinoma
dbGaP
HTAPP-853-...tumor.bam
HTAN HTAPP
HTA1_853_4381502
Bulk RNA-seq
Level 2
Breast NOS
Intraductal carcinoma NOS
dbGaP
HTAPP-861-...tumor.bam
HTAN HTAPP
HTA1_861_7028502
Bulk RNA-seq
Level 2
Breast NOS
Lobular and ductal carcinoma
dbGaP
HTAPP-862-...tumor.bam
HTAN HTAPP
HTA1_862_7059502
Bulk RNA-seq
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-862-...tumor.bam
HTAN HTAPP
HTA1_862_7060502
Bulk RNA-seq
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-870-...tumor.bam
HTAN HTAPP
HTA1_870_7089502
Bulk RNA-seq
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-873-...tumor.bam
HTAN HTAPP
HTA1_873_7119502
Bulk RNA-seq
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-880-...tumor.bam
HTAN HTAPP
HTA1_880_7179502
Bulk RNA-seq
Level 2
Breast NOS
Lobular carcinoma NOS
dbGaP
HTAPP-889-...tumor.bam
HTAN HTAPP
HTA1_889_7269502
Bulk RNA-seq
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-887-...tumor.bam
HTAN HTAPP
HTA1_887_7250502
Bulk RNA-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-890-...tumor.bam
HTAN HTAPP
HTA1_890_7299502
Bulk RNA-seq
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-895-...tumor.bam
HTAN HTAPP
HTA1_895_7359502
Bulk RNA-seq
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-889-...tumor.bam
HTAN HTAPP
HTA1_889_7270502
Bulk RNA-seq
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
processed_...es106.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es237.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ages0.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es192.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es224.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ages4.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges71.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges28.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es217.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges88.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es100.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es107.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges63.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ages3.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges84.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es160.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es183.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es130.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ages9.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges57.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es111.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges42.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es200.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es109.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges94.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es144.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es103.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es218.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es223.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es114.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ages7.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es121.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es221.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es174.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es182.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es165.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges97.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges99.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ages5.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ages8.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es228.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges20.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es173.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es127.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es116.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges75.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges72.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges77.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...es155.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
processed_...ges82.tif
HTAN HTAPP
HTA1_313_932304
MERFISH
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)
Image Viewer Coming Soon
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082311
ExSEQ
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_562_25814012
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_562_25814011
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_562_25814013
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_562_25814014
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_752_40514011
MIBI
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_752_40514012
MIBI
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_752_40514013
MIBI
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_752_40514014
MIBI
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_783_40814011
MIBI
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_783_40814012
MIBI
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_783_40814013
MIBI
Level 2
Lower-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_519_67624011
MIBI
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_519_67624012
MIBI
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_519_67624013
MIBI
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_519_67624014
MIBI
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_519_67624015
MIBI
Level 2
Lower-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_516_67614011
MIBI
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_313_9324011
MIBI
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_313_9324012
MIBI
Level 2
Upper-outer quadrant of breast
Adenocarcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_364_13214012
MIBI
Level 2
Upper-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_364_13214013
MIBI
Level 2
Upper-inner quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_330_10824011
MIBI
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_330_10824012
MIBI
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_330_10824013
MIBI
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_330_10824014
MIBI
Level 2
Overlapping lesion of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_514_67604011
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_514_67604012
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_514_67604013
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_997_77894011
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_997_77894012
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_997_77894013
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_997_77894014
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_997_77894015
MIBI
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_880_71794013
MIBI
Level 2
Breast NOS
Lobular carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_880_71794014
MIBI
Level 2
Breast NOS
Lobular carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_880_71794015
MIBI
Level 2
Breast NOS
Lobular carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_917_45314011
MIBI
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_917_45314012
MIBI
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_917_45314013
MIBI
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_917_45314014
MIBI
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_917_45314015
MIBI
Level 2
Upper-outer quadrant of breast
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_982_76294011
MIBI
Level 2
Breast NOS
Lobular and ductal carcinoma
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_982_76294012
MIBI
Level 2
Breast NOS
Lobular and ductal carcinoma
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_853_43814013
MIBI
Level 2
Breast NOS
Intraductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_982_76294013
MIBI
Level 2
Breast NOS
Lobular and ductal carcinoma
CRDC-GC/SB-CGC (open access)
MIBITIFF_M...d.ome.tiff
HTAN HTAPP
HTA1_853_43814014
MIBI
Level 2
Breast NOS
Intraductal carcinoma NOS
CRDC-GC/SB-CGC (open access)
HTAN HTAPP
HTA1_562_25814014
MIBI
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_562_25814011
MIBI
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_752_40514011
MIBI
Level 3
Lower-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_752_40514013
MIBI
Level 3
Lower-inner quadrant of breast
Ductal carcinoma NOS
Synapse
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
BPC-20-ZC-...776-1.svs
HTAN HTAPP
HTA1_880_7179301
H&E
Level 2
Breast NOS
Lobular carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...776-3.svs
HTAN HTAPP
HTA1_878_7149301
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...776-2.svs
HTAN HTAPP
HTA1_880_7179306
H&E
Level 2
Breast NOS
Lobular carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...776-4.svs
HTAN HTAPP
HTA1_878_7149307
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...879-4.svs
HTAN HTAPP
HTA1_213_6752306
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...879-2.svs
HTAN HTAPP
HTA1_514_6760301
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...879-1.svs
HTAN HTAPP
HTA1_514_6760306
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...879-3.svs
HTAN HTAPP
HTA1_213_6752301
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...879-5.svs
HTAN HTAPP
HTA1_812_8239306
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

BPC-20-ZC-...879-6.svs
HTAN HTAPP
HTA1_812_8239301
H&E
Level 2
Breast NOS
Ductal carcinoma NOS
CRDC-GC/SB-CGC (open access)

HTAN HTAPP
HTA1_895_7359601
H&E
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_313_932306
H&E
Unknown
Upper-outer quadrant of breast
Adenocarcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082301
H&E
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_313_932301
H&E
Unknown
Upper-outer quadrant of breast
Adenocarcinoma NOS
Synapse
HTAN HTAPP
HTA1_213_6752306
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_364_1321306
H&E
Unknown
Upper-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082306
H&E
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_364_1321301
H&E
Unknown
Upper-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_213_6752301
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_880_7179306
H&E
Unknown
Breast NOS
Lobular carcinoma NOS
Synapse
HTAN HTAPP
HTA1_812_8239301
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_982_7629301
H&E
Unknown
Breast NOS
Lobular and ductal carcinoma
Synapse
HTAN HTAPP
HTA1_514_6760306
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_783_4081301
H&E
Unknown
Lower-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_514_6760301
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_812_8239306
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_853_4381301
H&E
Unknown
Breast NOS
Intraductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_783_4081306
H&E
Unknown
Lower-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_853_4381306
H&E
Unknown
Breast NOS
Intraductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_878_7149301
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_878_7149307
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_880_7179301
H&E
Unknown
Breast NOS
Lobular carcinoma NOS
Synapse
HTAN HTAPP
HTA1_917_4531306
H&E
Unknown
Upper-outer quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_944_7479601
H&E
Unknown
Lower-outer quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_917_4531301
H&E
Unknown
Upper-outer quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_982_7629306
H&E
Unknown
Breast NOS
Lobular and ductal carcinoma
Synapse
HTAN HTAPP
HTA1_997_7789306
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_997_7789301
H&E
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
HTAPP-944-...03_L2.bam
HTAN HTAPP
2 Biospecimens
Slide-seq
Level 2
Lower-outer quadrant of breast, Overlapping lesion of breast
Ductal carcinoma NOS
dbGaP
HTAPP-880-..._5_L2.bam
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 2
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
dbGaP
HTAPP-880-..._6_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-878-..._7_L2.bam
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 2
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
dbGaP
HTAPP-878-..._8_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-514-...20_L2.bam
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-514-...21_L2.bam
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-213-...22_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-213-...23_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-812-...24_L2.bam
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 2
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
dbGaP
HTAPP-812-...25_L2.bam
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 2
Breast NOS
Ductal carcinoma NOS
dbGaP
HTAPP-982-...01_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-982-...02_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast, Overlapping lesion of breast
Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-997-...03_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast, Overlapping lesion of breast
Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-997-...04_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-917-...05_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-917-...06_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast, Overlapping lesion of breast
Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-853-...14_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-853-...15_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast, Overlapping lesion of breast
Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-313-...16_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast, Overlapping lesion of breast
Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-313-...17_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-330-...19_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Upper-outer quadrant of breast, Overlapping lesion of breast
Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
dbGaP
HTAPP-783-...01_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-783-...02_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-364-...05_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAPP-364-...06_L2.bam
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 2
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
dbGaP
HTAN HTAPP
2 Biospecimens
Slide-seq
Level 3
Lower-outer quadrant of breast, Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq
Level 3
Lower-outer quadrant of breast, Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq
Level 3
Lower-outer quadrant of breast, Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq
Level 3
Lower-outer quadrant of breast, Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq
Level 3
Lower-outer quadrant of breast, Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq
Level 3
Lower-outer quadrant of breast, Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
Synapse
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 3
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
Synapse
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 3
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
Synapse
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 3
Breast NOS, Upper-outer quadrant of breast
Lobular carcinoma NOS, Lobular and ductal carcinoma, Ductal carcinoma NOS, Intraductal carcinoma NOS, Adenocarcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Lobular carcinoma NOS, Ductal carcinoma NOS
Synapse
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 3
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 3
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
6 Biospecimens
Slide-seq
Level 3
Breast NOS, Lower-inner quadrant of breast, Upper-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
3 Biospecimens
Slide-seq
Level 3
Breast NOS
Ductal carcinoma NOS
Synapse
Level
Columns (11/25)
Filename
Atlas Name
Publications
Biospecimen
Assay
Level
Organ
Diagnosis
Data Access
Metadata
View
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Upper-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Lower-inner quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Upper-outer quadrant of breast
Adenocarcinoma NOS
Synapse
HTAN HTAPP
HTA1_944_7479602
Slide-seq V2
Unknown
Lower-outer quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_330_1082307
Slide-seq V2
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_895_7359603
Slide-seq V2
Unknown
Overlapping lesion of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
HTA1_982_7629302
Slide-seq V2
Unknown
Breast NOS
Lobular and ductal carcinoma
Synapse
HTAN HTAPP
HTA1_917_4531307
Slide-seq V2
Unknown
Upper-outer quadrant of breast
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Breast NOS
Intraductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Breast NOS
Lobular carcinoma NOS
Synapse
HTAN HTAPP
2 Biospecimens
Slide-seq V2
Unknown
Breast NOS
Ductal carcinoma NOS
Synapse