The HTAN DCC has finalized the third release of HTAN data. This v3 release includes new data from several atlases, and includes:
The Level 3-4 data are downloadable via the HTAN Data Portal. The Access-controlled level 1-2 data will be available through Seven Bridges Cancer Genomics Cloud (CGC) in the beginning of next year.
Reintroduce Vanderbilt's cellxgene instance with updated single cell data including cell type annotations.
Remove sequencing data that is not downloadable yet from the explore page. Add a "Download Source" filter button to allow filtering by data repository.
Vanderbilt has Level 3 BulkDNASeq data available now
Publication pages with associated data are now available for:
New data available for Trans-Network Project (TNP) SARDANA including CODEX, CyCIF, H&E and SABER.
New WUSTL PDAC data available including 10X Visum, scRNASeq, Bulk DNA and RNA Seq as part of Release 2.3.
All the HTAN MSKCC single cell sequencing data with harmonized cell type information is now available directly from the cellxgene website.
Level 1 and 2 sequencing data are now available through dbGaP.
HTAPP Level 4 scRNA-seq data (CRC) is now available as part of Release 2.2.
Additional HTAN data have been released (Release 2.1).
Disabled Vanderbilt's cellxgene instance pending new data updates.
The second data release of HTAN public data is now available on the HTAN Data Portal. This v2.0 release includes new data from several HTAN atlases:
The first release of HTAN public data is now available on the HTAN Data Portal. This release includes Level 3 and 4 scRNAseq data from several HTAN atlases.