Data Updates

April 14th, 2023

Additional level 1/2 data released through dbGaP.

April 12th, 2023

WUSTL Visium data levels have been restructured and additional auxillerary assay files were released.

March 16th, 2023

New data from WUSTL is available as part of Release 3.2:

  • Level 2 & 3 single cell RNA-sequencing data from PDAC study
  • Level 2 & 3 10X Visium data from PDAC and CCRCC studies

March 10th, 2023

New data is available from WUSTL and MSK atlases as part of Release 3.1:

  • Level 1 & 2 10X Visium data from WUSTL PDAC and CCRCC studies
  • Level 1-3 single cell and single nucleus RNA-sequencing data from WUSTL PDAC study
  • Level 1-4 MSK single cell RNA-seq data

December 21st, 2022

The HTAN DCC has finalized the third release of HTAN data. This v3 release includes new data from several atlases, and includes:

  • Level 1-2 data
    • 94 new participants with scRNASeq
    • 339 new participants with Bulk DNASeq
    • 148 new participants with Bulk RNASeq
    • 29 new participants with MIBI
    • 5 new participants with H&E
    • 2 new participants with CyCIF
  • Level 3-4 data
    • 181 new cases with higher level scRNASeq data
    • 30 new cases with higher level segmentation data for Imaging

The Level 3-4 data are downloadable via the HTAN Data Portal. The Access-controlled level 1-2 data will be available through Seven Bridges Cancer Genomics Cloud (CGC) in the beginning of next year.

October 26th, 2022

Reintroduce Vanderbilt's cellxgene instance with updated single cell data including cell type annotations.

October 24th, 2022

Remove sequencing data that is not downloadable yet from the explore page. Add a "Download Source" filter button to allow filtering by data repository.

August 30th, 2022

Vanderbilt has Level 3 BulkDNASeq data available now

August 24th, 2022

Publication pages with associated data are now available for:

August 12th, 2022

Imaging data from HMS, OHSU and WashU are now available in DICOM-TIFF format from the Imaging Data Commons (IDC) .

July 11th, 2022

New data available for Trans-Network Project (TNP) SARDANA including CODEX, CyCIF, H&E and SABER.

June 15th, 2022

New WUSTL PDAC data available including 10X Visum, scRNASeq, Bulk DNA and RNA Seq as part of Release 2.3.

June 10th, 2022

All the HTAN MSKCC single cell sequencing data with harmonized cell type information is now available directly from the cellxgene website.

May 27th, 2022

Level 1 and 2 sequencing data are now available through dbGaP.

May 18th, 2022

HTAPP Level 4 scRNA-seq data (CRC) is now available as part of Release 2.2.

March 30th, 2022

Additional HTAN data have been released (Release 2.1).

March 25th, 2022

Disabled Vanderbilt's cellxgene instance pending new data updates.

March 5th, 2022

The second data release of HTAN public data is now available on the HTAN Data Portal. This v2.0 release includes new data from several HTAN atlases:

  • 192 cases with new imaging data of which 86 have MIBI data, 105 CyCIF, and 1 both CyCIF and mIHC. This means people can now browse and view over 500 images in Minerva.
  • 100 cases with new scRNASeq data of which 62 have level 3 and higher available for download, allowing for download and analysis of scRNASeq data from over 150 cases and 250 biospecimens.
  • 1 case with both bulk DNASeq and RNASeq, which can now be explored in cBioPortal as well as downloaded from the data portal.

May 24th, 2021

The first release of HTAN public data is now available on the HTAN Data Portal. This release includes Level 3 and 4 scRNAseq data from several HTAN atlases.